Evaluation par Philippe et commentaires par Sophie de la liste des des termes les plus frŽquents (>20 occurences) reconnus par Nomino ˆ partir du fichier transcript_epure.txt le 3 avril 2003 --------------------------------------------------------------------- NOMINO Options : ucna (unitŽs complexes nominales additionnelles), ucn combinŽes 1er niveau ------------------------------------------------------------------------ I. Notation ------------ Mme format de commentaires que pour les termes de Didier Bourigault (Syntex) * : ok # : doute de Philippe (terme Žquivalent existant, entre parenthses dans la liste) _ : il manque un mot (je l'indique entre parenthses) ˆ gauche et/ou ˆ droite ? : on ne sait pas trop \ : pas un terme II. Comptages ------------- CAS et POURCENTAGES Nombre total de termes extraits par Nomino: 191 TYPE | Nbre |Pourcentage| --------------------------------------------- * : ok | 164 | 85,86 % | # : doute de Philippe | 0 | 0 % | pas de termes avec des comp. Prep _ : il manque un mot | 11 | 5,76 % | ? : on ne sait pas trop | 0 | 0 % | \ : pas un terme | 16 | 8,38 | --------------------------------------------- IV. La liste ------------ Termes les plus frŽquents (ˆ partir de 20) 1381 * bacillus subtilis 631 * B. subtilis 545 * Escherichia coli 377 * RNA polymerase 304 * E. coli 254 * amino acid 222 * nucleotide sequence 195 * sigma factor 168 _ acid sequence ("amino" ou "nucleic") 159 * amino acid sequence 146 * transcription factor 145 * reading frame 144 * gene expression 135 * open reading frame 123 * structural gene 121 * stationary phase 118 * gene product 111 * promoter region 102 * DNA fragment 101 * DNA sequence 93 * regulatory protein 91 * mother cell 80 * transcription start 78 * transcriptional fusion 77 * start site 70 * transcription initiation 69 _ vitro transcription ("in") 67 * primer extension 66 5 _ end (') 66 * base pair 66 * molecular weight 65 \ extension analysis 63 * binding site 62 _ acid residue ("amino") 62 * sequence analysis 61 * bacillus thuringiensis 59 _ blot analysis ("Western" ou "Northern") 58 \ high level 58 * consensus sequence 57 * sigma E 55 * catabolite repression 55 * deletion analysis 55 * Primer extension analysis 53 * amino acid residue 53 * vegetative growth 52 * mutant strain 52 * transcription start site 52 * RNA synthesis 51 * gram-positive bacteria 51 * sporulation gene 50 * sigma F 50 * molecular mass 49 \ degree C 49 \ E sigma 49 * spore formation 48 * deduced amino acid sequence 48 * transcription terminator 46 * promoter sequence 44 * exponential growth 44 * lacz fusion 44 * wild type 43 * bacillus megaterium 43 * bacillus stearothermophilus 43 * regulatory gene 43 \ start point 43 * transcription termination 42 3 _ end (') 42 * leader region 42 * regulatory region 42 * secondary structure 42 * sequence similarity 40 * transcription unit 39 * heat shock 39 * vegetative cell 38 * B.subtilis chromosome 38 \ J. Bacteriol (nom de journal) 38 * promoter activity 38 * regulatory system 37 * B. thuringiensis 37 * lacz gene 37 * membrane protein 37 * response regulator 37 * wild-type cell 36 \ first gene 36 * recombinant plasmid 36 * reporter gene 36 \ phage phi 35 * unknown function 35 \ early stage 34 * coding region 34 * growth phase 34 * initiation site 34 * signal transduction 33 * transcriptional unit 33 * bacillus licheniformis 33 * wild-type strain 33 * null mutation 33 * sigma H 33 * sigma K 33 * sigma subunit 32 * carbon source 32 * gram-negative bacteria 32 * sequence homology 32 * signal peptide 31 * endospore formation 31 \ degree C. 31 * protein synthesis 31 * transcription start point 31 * multicopy plasmid 31 * growth medium 31 \ ABSTRACT TRUNCATED AT 31 \ ABSTRACT TRUNCATED 30 core RNA _ ("polymerase") 30 * negative regulator 30 * RNA polymerase holoenzyme 29 * DNA replication 29 * staphylococcus aureus 29 * salmonella typhimurium 29 * bacterium bacillus subtilis 29 * B. subtilis RNA polymerase 29 * coding sequence 28 * ribosome binding site 28 * Lactococcus lactis 28 * chromosomal DNA 28 * significant homology 28 * transcriptional activator 27 * core RNA polymerase 27 * gene cluster 27 * Northern blot analysis 27 * positive regulator 27 * sigma B 26 * transcriptional level 26 * genetic competence 26 * cell division 26 \ academic pres (Žditeur) 26 \ academic Press (Žditeur) 26 * attenuation protein 26 * sigma G 25 * beta-galactosidase activity 25 * inverted repeat 25 * mutant cell 25 \ late stage 25 * Bacillus subtilis RNA polymerase 24 * B. megaterium 24 * bacillus cereus 24 stage II _ ("sporulation") !! on ne le trouve jamais avec "sporulation" mais avec "gene" 24 * bacillus anthracis 24 * gene order 23 * crystal protein 23 * cloned gene 23 * chloramphenicol acetyltransferase 23 * minimal medium 23 * transcriptional regulation 23 * complex formation 23 * growth condition 23 bacterium bacillus _ ("subtilis") 23 * DNA region 23 * complete nucleotide sequence 23 open reading _ ("frame") 23 * bacillus brevis 22 * genetic analysis 22 * B. subtilis cell 22 * competence development 22 * stem-loop structure 22 * transcriptional start point 22 * translation initiation 22 * transcriptional regulator 22 * bacillus species 22 * constitutive expression 22 polymerase chain _ ("reaction") 22 * saccharomyces cerevisiae 21 * dna-binding protein 21 * ribosomal protein 21 \ high degree 21 * polymerase chain reaction 21 * forespore compartment 21 * trp operon 21 * B. stearothermophilus 21 * alpha-amylase gene 21 * genetic map 20 * transcriptional activation 20 * upstream region 20 * L. lactis 20 * DNA segment 20 * bacillus subtilis phage 20 * translational fusion 20 * repeat sequence 20 * cell type 20 * chloramphenicol resistance 20 * restriction fragment 20 * bacillus subtilis phage phi